Zsyntax: A Formal Language for Molecular Biology with Projected Applications in Text Mining and Biological Prediction

نویسندگان

  • Giovanni Boniolo
  • Marcello D'Agostino
  • Pier Paolo Di Fiore
چکیده

We propose a formal language that allows for transposing biological information precisely and rigorously into machine-readable information. This language, which we call Zsyntax (where Z stands for the Greek word zetaomegaeta, life), is grounded on a particular type of non-classical logic, and it can be used to write algorithms and computer programs. We present it as a first step towards a comprehensive formal language for molecular biology in which any biological process can be written and analyzed as a sort of logical "deduction". Moreover, we illustrate the potential value of this language, both in the field of text mining and in that of biological prediction.

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عنوان ژورنال:

دوره 5  شماره 

صفحات  -

تاریخ انتشار 2010